This package provides an implementation of the inference pipeline of AlphaFold v2.0. This is a completely new model that was entered in CASP14 and pub

deepmind / alphafold

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This package provides an implementation of the inference pipeline of AlphaFold v2.0. This is a completely new model that was entered in CASP14 and published in Nature. For simplicity, we refer to this model as AlphaFold throughout the rest of this document.

Any publication that discloses findings arising from using this source code or the model parameters should cite the AlphaFold paper.

The output of this command should show a list of your GPUs. If it doesn't, check if you followed all steps correctly when setting up the NVIDIA Container Toolkit or take a look at the following NVIDIA Docker issue.

We provide a script scripts/download_all_data.sh that can be used to download and set up all of these databases. This should take 8–12 hours.

📒 Note: The total download size is around 428 GB and the total size when unzipped is 2.2 TB. Please make sure you have a large enough hard drive space, bandwidth and time to download.

This script will also download the model parameter files. Once the script has finished, you should have the following directory structure:

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